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Endpoints","\u002Fconnector-development\u002Ftutorial\u002Fsila-endpoints\u002F","20.connector-development\u002F20.tutorial\u002F10.sila-endpoints",{"title":836,"path":837,"stem":838,"type":46,"device":6},"Data Endpoints","\u002Fconnector-development\u002Ftutorial\u002Fdata-endpoints\u002F","20.connector-development\u002F20.tutorial\u002F20.data-endpoints",{"title":840,"path":841,"stem":842,"type":46,"device":6},"Controls","\u002Fconnector-development\u002Ftutorial\u002Fcontrols\u002F","20.connector-development\u002F20.tutorial\u002F30.controls",{"title":844,"path":845,"stem":846,"type":46,"device":6},"SiLA Data Types","\u002Fconnector-development\u002Ftutorial\u002Fdata-types\u002F","20.connector-development\u002F20.tutorial\u002F40.data-types",{"title":848,"path":849,"stem":850,"type":46,"device":6},"Feature","\u002Fconnector-development\u002Ftutorial\u002Fconnector-structure\u002F","20.connector-development\u002F20.tutorial\u002F70.connector-structure",{"title":852,"path":853,"stem":854,"type":46,"device":6},"Hardware Communication","\u002Fconnector-development\u002Ftutorial\u002Fhardware-communication\u002F","20.connector-development\u002F20.tutorial\u002F90.hardware-communication",{"title":272,"type":6,"device":6,"path":856,"stem":857,"children":858,"page":41},"\u002Fconnector-development\u002Fconcepts\u002F","20.connector-development\u002F30.concepts",[859],{"title":860,"path":861,"stem":862,"type":285,"device":6},"SiLA","\u002Fconnector-development\u002Fconcepts\u002Fsila\u002F","20.connector-development\u002F30.concepts\u002Fsila",{"title":864,"path":865,"stem":866,"children":867,"page":41},"Guides","\u002Fconnector-development\u002Fguides\u002F","20.connector-development\u002F40.guides",[868,872,876,880,884,888,892,895,899],{"title":869,"path":870,"stem":871,"type":24,"device":6},"Configuration","\u002Fconnector-development\u002Fguides\u002Fconfiguration\u002F","20.connector-development\u002F40.guides\u002F20.configuration",{"title":873,"path":874,"stem":875,"type":24,"device":6},"Logging","\u002Fconnector-development\u002Fguides\u002Flogging\u002F","20.connector-development\u002F40.guides\u002F21.logging",{"title":877,"path":878,"stem":879,"type":24,"device":6},"Deployment","\u002Fconnector-development\u002Fguides\u002Fdeployment\u002F","20.connector-development\u002F40.guides\u002F30.deployment",{"title":881,"path":882,"stem":883,"type":24,"device":6},"Security","\u002Fconnector-development\u002Fguides\u002Fsecurity\u002F","20.connector-development\u002F40.guides\u002F40.security",{"title":885,"path":886,"stem":887,"type":24,"device":6},"Subscriptions","\u002Fconnector-development\u002Fguides\u002Fsubscriptions\u002F","20.connector-development\u002F40.guides\u002F45.subscriptions",{"title":889,"path":890,"stem":891,"type":24,"device":6},"Execution Modes","\u002Fconnector-development\u002Fguides\u002Fexecution-modes\u002F","20.connector-development\u002F40.guides\u002F46.execution-modes",{"title":380,"path":893,"stem":894,"type":24,"device":6},"\u002Fconnector-development\u002Fguides\u002Ferror-handling\u002F","20.connector-development\u002F40.guides\u002F50.error-handling",{"title":896,"path":897,"stem":898,"type":24,"device":6},"Serial Troubleshooting","\u002Fconnector-development\u002Fguides\u002Fserial-troubleshooting\u002F","20.connector-development\u002F40.guides\u002F70.serial-troubleshooting",{"title":900,"path":901,"stem":902,"type":24,"device":6},"Testing","\u002Fconnector-development\u002Fguides\u002Ftesting\u002F","20.connector-development\u002F40.guides\u002F80.testing",{"title":904,"path":905,"stem":906,"children":907,"type":6,"device":6},"References","\u002Fconnector-development\u002Freference\u002F","20.connector-development\u002F50.reference\u002Findex",[908],{"title":904,"path":905,"stem":906,"type":200,"device":6},{"id":910,"title":780,"body":911,"description":3355,"device":6,"extension":3356,"links":6,"meta":3357,"navigation":978,"path":3358,"seo":3359,"stem":782,"type":200,"__hash__":3360},"docs\u002F07.labware\u002F40.tubes-and-tube-racks.md",{"type":912,"value":913,"toc":3346},"minimark",[914,919,928,940,943,1439,1442,1623,1626,1630,1637,1758,1761,1844,1847,1910,1914,1924,1937,2390,2403,2417,2662,2667,2677,2726,2729,2831,2853,2918,2922,2931,3010,3016,3040,3046,3054,3258,3261,3267,3335,3342],[915,916,918],"h2",{"id":917},"tubes","Tubes",[920,921,922,923,927],"p",{},"Tubes can be defined using the ",[924,925,926],"code",{},"Tube"," base class. A tube has a base dimension equal to the maximum outer diameter in x- and y-direction and the maximum total height.",[920,929,930,931,935,936,939],{},"A fillable tube has a container made up of one or more sections. Sections are defined ",[932,933,934],"strong",{},"top-to-bottom"," — the first section in the list is the uppermost part of the tube, and the last section is the bottom. It is possible to define one or more ",[924,937,938],{},"Hole"," objects to model pipetting channel access points.",[920,941,942],{},"In the example below, a 50 mL conical tube is defined with a cylindrical upper section and a conical frustum at the bottom. A single 9 mm × 9 mm access hole is defined with a depth of 113.65 mm.",[944,945,950],"pre",{"className":946,"code":947,"language":948,"meta":949,"style":949},"language-python shiki shiki-themes github-light-high-contrast github-light-high-contrast github-dark-default","import collections.abc\nimport dataclasses\n\nfrom unitelabs.labware import (\n    ConicalFrustum,\n    Container,\n    Cylinder,\n    Hole,\n    Tube,\n    Vector,\n    place,\n)\n\n\n@dataclasses.dataclass\nclass Standard50mLTube(Tube):\n    dimensions: Vector = dataclasses.field(default_factory=lambda: Vector(x=29.36, y=29.36, z=114.65))\n    container: Container = dataclasses.field(\n        default_factory=lambda: Container(\n            max_volume=50_000,\n            sections=[\n                Cylinder(radius=13.89, height=98.77),           # upper cylindrical section (top)\n                ConicalFrustum(radius_lower=3.6, radius_upper=13.89, height=14.88),  # conical bottom\n            ],\n        )\n    )\n    children: collections.abc.Sequence[Hole] = dataclasses.field(\n        repr=False,\n        default_factory=lambda: [\n            Hole(dimensions=dimensions).copy(location=location)\n            for location, dimensions in place(\n                cols=1, rows=1, item=Vector(x=9, y=9, z=113.65), boundary=Vector(x=29.36, y=29.36, z=114.65)\n            )\n        ],\n    )\n","python","",[924,951,952,965,973,980,994,1000,1006,1012,1018,1024,1030,1036,1042,1047,1052,1059,1078,1130,1141,1152,1166,1177,1208,1246,1252,1258,1264,1274,1287,1297,1319,1334,1422,1428,1434],{"__ignoreMap":949},[953,954,957,961],"span",{"class":955,"line":956},"line",1,[953,958,960],{"class":959},"sxkbv","import",[953,962,964],{"class":963},"sc-9e"," collections.abc\n",[953,966,968,970],{"class":955,"line":967},2,[953,969,960],{"class":959},[953,971,972],{"class":963}," dataclasses\n",[953,974,976],{"class":955,"line":975},3,[953,977,979],{"emptyLinePlaceholder":978},true,"\n",[953,981,983,986,989,991],{"class":955,"line":982},4,[953,984,985],{"class":959},"from",[953,987,988],{"class":963}," unitelabs.labware ",[953,990,960],{"class":959},[953,992,993],{"class":963}," (\n",[953,995,997],{"class":955,"line":996},5,[953,998,999],{"class":963},"    ConicalFrustum,\n",[953,1001,1003],{"class":955,"line":1002},6,[953,1004,1005],{"class":963},"    Container,\n",[953,1007,1009],{"class":955,"line":1008},7,[953,1010,1011],{"class":963},"    Cylinder,\n",[953,1013,1015],{"class":955,"line":1014},8,[953,1016,1017],{"class":963},"    Hole,\n",[953,1019,1021],{"class":955,"line":1020},9,[953,1022,1023],{"class":963},"    Tube,\n",[953,1025,1027],{"class":955,"line":1026},10,[953,1028,1029],{"class":963},"    Vector,\n",[953,1031,1033],{"class":955,"line":1032},11,[953,1034,1035],{"class":963},"    place,\n",[953,1037,1039],{"class":955,"line":1038},12,[953,1040,1041],{"class":963},")\n",[953,1043,1045],{"class":955,"line":1044},13,[953,1046,979],{"emptyLinePlaceholder":978},[953,1048,1050],{"class":955,"line":1049},14,[953,1051,979],{"emptyLinePlaceholder":978},[953,1053,1055],{"class":955,"line":1054},15,[953,1056,1058],{"class":1057},"s4qFZ","@dataclasses.dataclass\n",[953,1060,1062,1065,1069,1072,1075],{"class":955,"line":1061},16,[953,1063,1064],{"class":959},"class",[953,1066,1068],{"class":1067},"sNqAu"," Standard50mLTube",[953,1070,1071],{"class":963},"(",[953,1073,926],{"class":1074},"sOiAX",[953,1076,1077],{"class":963},"):\n",[953,1079,1081,1084,1087,1090,1093,1096,1099,1102,1104,1107,1110,1113,1115,1117,1119,1122,1124,1127],{"class":955,"line":1080},17,[953,1082,1083],{"class":963},"    dimensions: Vector ",[953,1085,1086],{"class":959},"=",[953,1088,1089],{"class":963}," dataclasses.field(",[953,1091,1092],{"class":1067},"default_factory",[953,1094,1095],{"class":959},"=lambda",[953,1097,1098],{"class":963},": Vector(",[953,1100,1101],{"class":1067},"x",[953,1103,1086],{"class":959},[953,1105,1106],{"class":1074},"29.36",[953,1108,1109],{"class":963},", ",[953,1111,1112],{"class":1067},"y",[953,1114,1086],{"class":959},[953,1116,1106],{"class":1074},[953,1118,1109],{"class":963},[953,1120,1121],{"class":1067},"z",[953,1123,1086],{"class":959},[953,1125,1126],{"class":1074},"114.65",[953,1128,1129],{"class":963},"))\n",[953,1131,1133,1136,1138],{"class":955,"line":1132},18,[953,1134,1135],{"class":963},"    container: Container ",[953,1137,1086],{"class":959},[953,1139,1140],{"class":963}," dataclasses.field(\n",[953,1142,1144,1147,1149],{"class":955,"line":1143},19,[953,1145,1146],{"class":1067},"        default_factory",[953,1148,1095],{"class":959},[953,1150,1151],{"class":963},": Container(\n",[953,1153,1155,1158,1160,1163],{"class":955,"line":1154},20,[953,1156,1157],{"class":1067},"            max_volume",[953,1159,1086],{"class":959},[953,1161,1162],{"class":1074},"50_000",[953,1164,1165],{"class":963},",\n",[953,1167,1169,1172,1174],{"class":955,"line":1168},21,[953,1170,1171],{"class":1067},"            sections",[953,1173,1086],{"class":959},[953,1175,1176],{"class":963},"[\n",[953,1178,1180,1183,1186,1188,1191,1193,1196,1198,1201,1204],{"class":955,"line":1179},22,[953,1181,1182],{"class":963},"                Cylinder(",[953,1184,1185],{"class":1067},"radius",[953,1187,1086],{"class":959},[953,1189,1190],{"class":1074},"13.89",[953,1192,1109],{"class":963},[953,1194,1195],{"class":1067},"height",[953,1197,1086],{"class":959},[953,1199,1200],{"class":1074},"98.77",[953,1202,1203],{"class":963},"),           ",[953,1205,1207],{"class":1206},"sIsDC","# upper cylindrical section (top)\n",[953,1209,1211,1214,1217,1219,1222,1224,1227,1229,1231,1233,1235,1237,1240,1243],{"class":955,"line":1210},23,[953,1212,1213],{"class":963},"                ConicalFrustum(",[953,1215,1216],{"class":1067},"radius_lower",[953,1218,1086],{"class":959},[953,1220,1221],{"class":1074},"3.6",[953,1223,1109],{"class":963},[953,1225,1226],{"class":1067},"radius_upper",[953,1228,1086],{"class":959},[953,1230,1190],{"class":1074},[953,1232,1109],{"class":963},[953,1234,1195],{"class":1067},[953,1236,1086],{"class":959},[953,1238,1239],{"class":1074},"14.88",[953,1241,1242],{"class":963},"),  ",[953,1244,1245],{"class":1206},"# conical bottom\n",[953,1247,1249],{"class":955,"line":1248},24,[953,1250,1251],{"class":963},"            ],\n",[953,1253,1255],{"class":955,"line":1254},25,[953,1256,1257],{"class":963},"        )\n",[953,1259,1261],{"class":955,"line":1260},26,[953,1262,1263],{"class":963},"    )\n",[953,1265,1267,1270,1272],{"class":955,"line":1266},27,[953,1268,1269],{"class":963},"    children: collections.abc.Sequence[Hole] ",[953,1271,1086],{"class":959},[953,1273,1140],{"class":963},[953,1275,1277,1280,1282,1285],{"class":955,"line":1276},28,[953,1278,1279],{"class":1067},"        repr",[953,1281,1086],{"class":959},[953,1283,1284],{"class":1074},"False",[953,1286,1165],{"class":963},[953,1288,1290,1292,1294],{"class":955,"line":1289},29,[953,1291,1146],{"class":1067},[953,1293,1095],{"class":959},[953,1295,1296],{"class":963},": [\n",[953,1298,1300,1303,1306,1308,1311,1314,1316],{"class":955,"line":1299},30,[953,1301,1302],{"class":963},"            Hole(",[953,1304,1305],{"class":1067},"dimensions",[953,1307,1086],{"class":959},[953,1309,1310],{"class":963},"dimensions).copy(",[953,1312,1313],{"class":1067},"location",[953,1315,1086],{"class":959},[953,1317,1318],{"class":963},"location)\n",[953,1320,1322,1325,1328,1331],{"class":955,"line":1321},31,[953,1323,1324],{"class":959},"            for",[953,1326,1327],{"class":963}," location, dimensions ",[953,1329,1330],{"class":959},"in",[953,1332,1333],{"class":963}," place(\n",[953,1335,1337,1340,1342,1345,1347,1350,1352,1354,1356,1359,1361,1364,1366,1368,1371,1373,1375,1377,1379,1381,1383,1385,1388,1391,1394,1396,1398,1400,1402,1404,1406,1408,1410,1412,1414,1416,1418,1420],{"class":955,"line":1336},32,[953,1338,1339],{"class":1067},"                cols",[953,1341,1086],{"class":959},[953,1343,1344],{"class":1074},"1",[953,1346,1109],{"class":963},[953,1348,1349],{"class":1067},"rows",[953,1351,1086],{"class":959},[953,1353,1344],{"class":1074},[953,1355,1109],{"class":963},[953,1357,1358],{"class":1067},"item",[953,1360,1086],{"class":959},[953,1362,1363],{"class":963},"Vector(",[953,1365,1101],{"class":1067},[953,1367,1086],{"class":959},[953,1369,1370],{"class":1074},"9",[953,1372,1109],{"class":963},[953,1374,1112],{"class":1067},[953,1376,1086],{"class":959},[953,1378,1370],{"class":1074},[953,1380,1109],{"class":963},[953,1382,1121],{"class":1067},[953,1384,1086],{"class":959},[953,1386,1387],{"class":1074},"113.65",[953,1389,1390],{"class":963},"), ",[953,1392,1393],{"class":1067},"boundary",[953,1395,1086],{"class":959},[953,1397,1363],{"class":963},[953,1399,1101],{"class":1067},[953,1401,1086],{"class":959},[953,1403,1106],{"class":1074},[953,1405,1109],{"class":963},[953,1407,1112],{"class":1067},[953,1409,1086],{"class":959},[953,1411,1106],{"class":1074},[953,1413,1109],{"class":963},[953,1415,1121],{"class":1067},[953,1417,1086],{"class":959},[953,1419,1126],{"class":1074},[953,1421,1041],{"class":963},[953,1423,1425],{"class":955,"line":1424},33,[953,1426,1427],{"class":963},"            )\n",[953,1429,1431],{"class":955,"line":1430},34,[953,1432,1433],{"class":963},"        ],\n",[953,1435,1437],{"class":955,"line":1436},35,[953,1438,1263],{"class":963},[920,1440,1441],{},"A simpler tube can be defined by omitting explicit container sections — in this case the container geometry is automatically derived from the tube's dimensions and shape:",[944,1443,1445],{"className":946,"code":1444,"language":948,"meta":949,"style":949},"import dataclasses\n\nfrom unitelabs.labware import Tube, Vector\nfrom unitelabs.labware.liquids import Container\n\n\n@dataclasses.dataclass\nclass SimpleTube15mL(Tube):\n    dimensions: Vector = dataclasses.field(default_factory=lambda: Vector(x=17, y=17, z=120))\n    container: Container = dataclasses.field(default_factory=Container)\n\n# The above would be identical to:\n@dataclasses.dataclass\nclass SimpleTube15mL(Tube):\n    dimensions: Vector = dataclasses.field(default_factory=lambda: Vector(x=17, y=17, z=120))\n",[924,1446,1447,1453,1457,1468,1480,1484,1488,1492,1505,1545,1560,1564,1569,1573,1585],{"__ignoreMap":949},[953,1448,1449,1451],{"class":955,"line":956},[953,1450,960],{"class":959},[953,1452,972],{"class":963},[953,1454,1455],{"class":955,"line":967},[953,1456,979],{"emptyLinePlaceholder":978},[953,1458,1459,1461,1463,1465],{"class":955,"line":975},[953,1460,985],{"class":959},[953,1462,988],{"class":963},[953,1464,960],{"class":959},[953,1466,1467],{"class":963}," Tube, Vector\n",[953,1469,1470,1472,1475,1477],{"class":955,"line":982},[953,1471,985],{"class":959},[953,1473,1474],{"class":963}," unitelabs.labware.liquids ",[953,1476,960],{"class":959},[953,1478,1479],{"class":963}," Container\n",[953,1481,1482],{"class":955,"line":996},[953,1483,979],{"emptyLinePlaceholder":978},[953,1485,1486],{"class":955,"line":1002},[953,1487,979],{"emptyLinePlaceholder":978},[953,1489,1490],{"class":955,"line":1008},[953,1491,1058],{"class":1057},[953,1493,1494,1496,1499,1501,1503],{"class":955,"line":1014},[953,1495,1064],{"class":959},[953,1497,1498],{"class":1067}," SimpleTube15mL",[953,1500,1071],{"class":963},[953,1502,926],{"class":1074},[953,1504,1077],{"class":963},[953,1506,1507,1509,1511,1513,1515,1517,1519,1521,1523,1526,1528,1530,1532,1534,1536,1538,1540,1543],{"class":955,"line":1020},[953,1508,1083],{"class":963},[953,1510,1086],{"class":959},[953,1512,1089],{"class":963},[953,1514,1092],{"class":1067},[953,1516,1095],{"class":959},[953,1518,1098],{"class":963},[953,1520,1101],{"class":1067},[953,1522,1086],{"class":959},[953,1524,1525],{"class":1074},"17",[953,1527,1109],{"class":963},[953,1529,1112],{"class":1067},[953,1531,1086],{"class":959},[953,1533,1525],{"class":1074},[953,1535,1109],{"class":963},[953,1537,1121],{"class":1067},[953,1539,1086],{"class":959},[953,1541,1542],{"class":1074},"120",[953,1544,1129],{"class":963},[953,1546,1547,1549,1551,1553,1555,1557],{"class":955,"line":1026},[953,1548,1135],{"class":963},[953,1550,1086],{"class":959},[953,1552,1089],{"class":963},[953,1554,1092],{"class":1067},[953,1556,1086],{"class":959},[953,1558,1559],{"class":963},"Container)\n",[953,1561,1562],{"class":955,"line":1032},[953,1563,979],{"emptyLinePlaceholder":978},[953,1565,1566],{"class":955,"line":1038},[953,1567,1568],{"class":1206},"# The above would be identical to:\n",[953,1570,1571],{"class":955,"line":1044},[953,1572,1058],{"class":1057},[953,1574,1575,1577,1579,1581,1583],{"class":955,"line":1049},[953,1576,1064],{"class":959},[953,1578,1498],{"class":1067},[953,1580,1071],{"class":963},[953,1582,926],{"class":1074},[953,1584,1077],{"class":963},[953,1586,1587,1589,1591,1593,1595,1597,1599,1601,1603,1605,1607,1609,1611,1613,1615,1617,1619,1621],{"class":955,"line":1054},[953,1588,1083],{"class":963},[953,1590,1086],{"class":959},[953,1592,1089],{"class":963},[953,1594,1092],{"class":1067},[953,1596,1095],{"class":959},[953,1598,1098],{"class":963},[953,1600,1101],{"class":1067},[953,1602,1086],{"class":959},[953,1604,1525],{"class":1074},[953,1606,1109],{"class":963},[953,1608,1112],{"class":1067},[953,1610,1086],{"class":959},[953,1612,1525],{"class":1074},[953,1614,1109],{"class":963},[953,1616,1121],{"class":1067},[953,1618,1086],{"class":959},[953,1620,1542],{"class":1074},[953,1622,1129],{"class":963},[920,1624,1625],{},"Here the container sections, height, and maximum volume are computed automatically from dimensions during initialization.",[915,1627,1629],{"id":1628},"tube-caps","Tube Caps",[920,1631,1632,1633,1636],{},"Tubes can have caps which are ",[924,1634,1635],{},"Cap"," objects placed on top of the tube:",[944,1638,1640],{"className":946,"code":1639,"language":948,"meta":949,"style":949},"from unitelabs.labware.tubes import Cap\nfrom unitelabs.labware.math import Decimal\n\n# Add a cap with custom dimensions\n@dataclasses.dataclass\nclass CustomCap(Cap):\n    dimensions: Vector = dataclasses.field(default_factory=lambda: Vector(x=8, y=8, z=8))\n    fitting_depth: Decimal = dataclasses.field(default=Decimal(\"5\"))  # 5mm overlap into tube\n",[924,1641,1642,1654,1666,1670,1675,1679,1692,1731],{"__ignoreMap":949},[953,1643,1644,1646,1649,1651],{"class":955,"line":956},[953,1645,985],{"class":959},[953,1647,1648],{"class":963}," unitelabs.labware.tubes ",[953,1650,960],{"class":959},[953,1652,1653],{"class":963}," Cap\n",[953,1655,1656,1658,1661,1663],{"class":955,"line":967},[953,1657,985],{"class":959},[953,1659,1660],{"class":963}," unitelabs.labware.math ",[953,1662,960],{"class":959},[953,1664,1665],{"class":963}," Decimal\n",[953,1667,1668],{"class":955,"line":975},[953,1669,979],{"emptyLinePlaceholder":978},[953,1671,1672],{"class":955,"line":982},[953,1673,1674],{"class":1206},"# Add a cap with custom dimensions\n",[953,1676,1677],{"class":955,"line":996},[953,1678,1058],{"class":1057},[953,1680,1681,1683,1686,1688,1690],{"class":955,"line":1002},[953,1682,1064],{"class":959},[953,1684,1685],{"class":1067}," CustomCap",[953,1687,1071],{"class":963},[953,1689,1635],{"class":1074},[953,1691,1077],{"class":963},[953,1693,1694,1696,1698,1700,1702,1704,1706,1708,1710,1713,1715,1717,1719,1721,1723,1725,1727,1729],{"class":955,"line":1008},[953,1695,1083],{"class":963},[953,1697,1086],{"class":959},[953,1699,1089],{"class":963},[953,1701,1092],{"class":1067},[953,1703,1095],{"class":959},[953,1705,1098],{"class":963},[953,1707,1101],{"class":1067},[953,1709,1086],{"class":959},[953,1711,1712],{"class":1074},"8",[953,1714,1109],{"class":963},[953,1716,1112],{"class":1067},[953,1718,1086],{"class":959},[953,1720,1712],{"class":1074},[953,1722,1109],{"class":963},[953,1724,1121],{"class":1067},[953,1726,1086],{"class":959},[953,1728,1712],{"class":1074},[953,1730,1129],{"class":963},[953,1732,1733,1736,1738,1740,1743,1745,1748,1752,1755],{"class":955,"line":1014},[953,1734,1735],{"class":963},"    fitting_depth: Decimal ",[953,1737,1086],{"class":959},[953,1739,1089],{"class":963},[953,1741,1742],{"class":1067},"default",[953,1744,1086],{"class":959},[953,1746,1747],{"class":963},"Decimal(",[953,1749,1751],{"class":1750},"sCx38","\"5\"",[953,1753,1754],{"class":963},"))  ",[953,1756,1757],{"class":1206},"# 5mm overlap into tube\n",[920,1759,1760],{},"One can assign a cap to a tube in the following ways:",[944,1762,1764],{"className":946,"code":1763,"language":948,"meta":949,"style":949},"# Initialize a lid with a cap directly (always defaults to None)\ntube = Tube(lid=CustomCap())\n\n# Or assign a cap to a tube's lid attribute\ntube.lid = CustomCap(fitting_depth=Decimal(\"5\"))\n\n# Or use tube.close() to assign a cap to a tube\ntube.close(CustomCap(fitting_depth=Decimal(\"5\")))\n",[924,1765,1766,1771,1789,1793,1798,1819,1823,1828],{"__ignoreMap":949},[953,1767,1768],{"class":955,"line":956},[953,1769,1770],{"class":1206},"# Initialize a lid with a cap directly (always defaults to None)\n",[953,1772,1773,1776,1778,1781,1784,1786],{"class":955,"line":967},[953,1774,1775],{"class":963},"tube ",[953,1777,1086],{"class":959},[953,1779,1780],{"class":963}," Tube(",[953,1782,1783],{"class":1067},"lid",[953,1785,1086],{"class":959},[953,1787,1788],{"class":963},"CustomCap())\n",[953,1790,1791],{"class":955,"line":975},[953,1792,979],{"emptyLinePlaceholder":978},[953,1794,1795],{"class":955,"line":982},[953,1796,1797],{"class":1206},"# Or assign a cap to a tube's lid attribute\n",[953,1799,1800,1803,1805,1808,1811,1813,1815,1817],{"class":955,"line":996},[953,1801,1802],{"class":963},"tube.lid ",[953,1804,1086],{"class":959},[953,1806,1807],{"class":963}," CustomCap(",[953,1809,1810],{"class":1067},"fitting_depth",[953,1812,1086],{"class":959},[953,1814,1747],{"class":963},[953,1816,1751],{"class":1750},[953,1818,1129],{"class":963},[953,1820,1821],{"class":955,"line":1002},[953,1822,979],{"emptyLinePlaceholder":978},[953,1824,1825],{"class":955,"line":1008},[953,1826,1827],{"class":1206},"# Or use tube.close() to assign a cap to a tube\n",[953,1829,1830,1833,1835,1837,1839,1841],{"class":955,"line":1014},[953,1831,1832],{"class":963},"tube.close(CustomCap(",[953,1834,1810],{"class":1067},[953,1836,1086],{"class":959},[953,1838,1747],{"class":963},[953,1840,1751],{"class":1750},[953,1842,1843],{"class":963},")))\n",[920,1845,1846],{},"One can manage and reassign caps on tubes in the following ways:",[944,1848,1850],{"className":946,"code":1849,"language":948,"meta":949,"style":949},"# Remove the cap from the tube and return it\ncap = tube.open()\n\n# Place a cap back onto the tube\ntube.close(cap)\n\n# Move a cap from one tube to another\ntube.reassign(to=tube2, lid=cap)\n",[924,1851,1852,1857,1867,1871,1876,1881,1885,1890],{"__ignoreMap":949},[953,1853,1854],{"class":955,"line":956},[953,1855,1856],{"class":1206},"# Remove the cap from the tube and return it\n",[953,1858,1859,1862,1864],{"class":955,"line":967},[953,1860,1861],{"class":963},"cap ",[953,1863,1086],{"class":959},[953,1865,1866],{"class":963}," tube.open()\n",[953,1868,1869],{"class":955,"line":975},[953,1870,979],{"emptyLinePlaceholder":978},[953,1872,1873],{"class":955,"line":982},[953,1874,1875],{"class":1206},"# Place a cap back onto the tube\n",[953,1877,1878],{"class":955,"line":996},[953,1879,1880],{"class":963},"tube.close(cap)\n",[953,1882,1883],{"class":955,"line":1002},[953,1884,979],{"emptyLinePlaceholder":978},[953,1886,1887],{"class":955,"line":1008},[953,1888,1889],{"class":1206},"# Move a cap from one tube to another\n",[953,1891,1892,1895,1898,1900,1903,1905,1907],{"class":955,"line":1014},[953,1893,1894],{"class":963},"tube.reassign(",[953,1896,1897],{"class":1067},"to",[953,1899,1086],{"class":959},[953,1901,1902],{"class":963},"tube2, ",[953,1904,1783],{"class":1067},[953,1906,1086],{"class":959},[953,1908,1909],{"class":963},"cap)\n",[915,1911,1913],{"id":1912},"tube-racks","Tube Racks",[920,1915,1916,1919,1920,1923],{},[924,1917,1918],{},"TubeRack","s consist of a grid of ",[924,1921,1922],{},"TubeSpot","s arranged into rows and columns. These spots can either contain tubes or be empty.",[920,1925,1926,1927,1929,1930,1933,1934,1936],{},"For non-standard grid sizes, create a subclass inheriting from ",[924,1928,1918],{},". The base class defaults to a 6x4 grid (24 tubes), but you can specify any ",[924,1931,1932],{},"cols"," and ",[924,1935,1349],{}," configuration:",[944,1938,1940],{"className":946,"code":1939,"language":948,"meta":949,"style":949},"import dataclasses\nimport decimal\nimport collections.abc\n\nfrom unitelabs.labware import TubeRack, Tube, TubeSpot, Vector\nfrom unitelabs.labware.liquids import Container\nfrom unitelabs.labware.math import place\n\n\n@dataclasses.dataclass\nclass CustomTubeRack(TubeRack):\n    \"\"\"A 6x4 tube rack for 15 mL conical tubes.\"\"\"\n\n    cols: int = 6\n    rows: int = 4\n    dimensions: Vector = dataclasses.field(default_factory=lambda: Vector(x=120, y=80, z=30))\n    fitting_depth: decimal.Decimal = dataclasses.field(default_factory=lambda: decimal.Decimal(\"25\"))\n\n    # Define tube spot positions using `place`\n    children: collections.abc.Sequence[TubeSpot] = dataclasses.field(\n        repr=False,\n        default_factory=lambda: [\n            TubeSpot().copy(location=loc)\n            for loc in place(\n                cols=6,\n                rows=4,\n                item=Vector(x=10, y=10),      # tube footprint\n                boundary=Vector(x=120, y=80),  # rack footprint\n            )\n        ],\n    )\n\n\n@dataclasses.dataclass\nclass Tube15mL(Tube):\n    \"\"\"15 mL conical tube.\"\"\"\n    dimensions: Vector = dataclasses.field(default_factory=lambda: Vector(x=17, y=17, z=120))\n    container: Container = dataclasses.field(default_factory=Container)\n\n\n# Create and fill the rack\nrack = CustomTubeRack(filled_with=Tube15mL)\n",[924,1941,1942,1948,1955,1961,1965,1976,1986,1997,2001,2005,2009,2022,2027,2031,2045,2057,2097,2118,2122,2127,2136,2146,2154,2166,2177,2188,2200,2230,2258,2262,2266,2270,2274,2278,2282,2295,2301,2340,2355,2360,2365,2371],{"__ignoreMap":949},[953,1943,1944,1946],{"class":955,"line":956},[953,1945,960],{"class":959},[953,1947,972],{"class":963},[953,1949,1950,1952],{"class":955,"line":967},[953,1951,960],{"class":959},[953,1953,1954],{"class":963}," decimal\n",[953,1956,1957,1959],{"class":955,"line":975},[953,1958,960],{"class":959},[953,1960,964],{"class":963},[953,1962,1963],{"class":955,"line":982},[953,1964,979],{"emptyLinePlaceholder":978},[953,1966,1967,1969,1971,1973],{"class":955,"line":996},[953,1968,985],{"class":959},[953,1970,988],{"class":963},[953,1972,960],{"class":959},[953,1974,1975],{"class":963}," TubeRack, Tube, TubeSpot, Vector\n",[953,1977,1978,1980,1982,1984],{"class":955,"line":1002},[953,1979,985],{"class":959},[953,1981,1474],{"class":963},[953,1983,960],{"class":959},[953,1985,1479],{"class":963},[953,1987,1988,1990,1992,1994],{"class":955,"line":1008},[953,1989,985],{"class":959},[953,1991,1660],{"class":963},[953,1993,960],{"class":959},[953,1995,1996],{"class":963}," place\n",[953,1998,1999],{"class":955,"line":1014},[953,2000,979],{"emptyLinePlaceholder":978},[953,2002,2003],{"class":955,"line":1020},[953,2004,979],{"emptyLinePlaceholder":978},[953,2006,2007],{"class":955,"line":1026},[953,2008,1058],{"class":1057},[953,2010,2011,2013,2016,2018,2020],{"class":955,"line":1032},[953,2012,1064],{"class":959},[953,2014,2015],{"class":1067}," CustomTubeRack",[953,2017,1071],{"class":963},[953,2019,1918],{"class":1074},[953,2021,1077],{"class":963},[953,2023,2024],{"class":955,"line":1038},[953,2025,2026],{"class":1750},"    \"\"\"A 6x4 tube rack for 15 mL conical tubes.\"\"\"\n",[953,2028,2029],{"class":955,"line":1044},[953,2030,979],{"emptyLinePlaceholder":978},[953,2032,2033,2036,2039,2042],{"class":955,"line":1049},[953,2034,2035],{"class":963},"    cols: ",[953,2037,2038],{"class":1074},"int",[953,2040,2041],{"class":959}," =",[953,2043,2044],{"class":1074}," 6\n",[953,2046,2047,2050,2052,2054],{"class":955,"line":1054},[953,2048,2049],{"class":963},"    rows: ",[953,2051,2038],{"class":1074},[953,2053,2041],{"class":959},[953,2055,2056],{"class":1074}," 4\n",[953,2058,2059,2061,2063,2065,2067,2069,2071,2073,2075,2077,2079,2081,2083,2086,2088,2090,2092,2095],{"class":955,"line":1061},[953,2060,1083],{"class":963},[953,2062,1086],{"class":959},[953,2064,1089],{"class":963},[953,2066,1092],{"class":1067},[953,2068,1095],{"class":959},[953,2070,1098],{"class":963},[953,2072,1101],{"class":1067},[953,2074,1086],{"class":959},[953,2076,1542],{"class":1074},[953,2078,1109],{"class":963},[953,2080,1112],{"class":1067},[953,2082,1086],{"class":959},[953,2084,2085],{"class":1074},"80",[953,2087,1109],{"class":963},[953,2089,1121],{"class":1067},[953,2091,1086],{"class":959},[953,2093,2094],{"class":1074},"30",[953,2096,1129],{"class":963},[953,2098,2099,2102,2104,2106,2108,2110,2113,2116],{"class":955,"line":1080},[953,2100,2101],{"class":963},"    fitting_depth: decimal.Decimal ",[953,2103,1086],{"class":959},[953,2105,1089],{"class":963},[953,2107,1092],{"class":1067},[953,2109,1095],{"class":959},[953,2111,2112],{"class":963},": decimal.Decimal(",[953,2114,2115],{"class":1750},"\"25\"",[953,2117,1129],{"class":963},[953,2119,2120],{"class":955,"line":1132},[953,2121,979],{"emptyLinePlaceholder":978},[953,2123,2124],{"class":955,"line":1143},[953,2125,2126],{"class":1206},"    # Define tube spot positions using `place`\n",[953,2128,2129,2132,2134],{"class":955,"line":1154},[953,2130,2131],{"class":963},"    children: collections.abc.Sequence[TubeSpot] ",[953,2133,1086],{"class":959},[953,2135,1140],{"class":963},[953,2137,2138,2140,2142,2144],{"class":955,"line":1168},[953,2139,1279],{"class":1067},[953,2141,1086],{"class":959},[953,2143,1284],{"class":1074},[953,2145,1165],{"class":963},[953,2147,2148,2150,2152],{"class":955,"line":1179},[953,2149,1146],{"class":1067},[953,2151,1095],{"class":959},[953,2153,1296],{"class":963},[953,2155,2156,2159,2161,2163],{"class":955,"line":1210},[953,2157,2158],{"class":963},"            TubeSpot().copy(",[953,2160,1313],{"class":1067},[953,2162,1086],{"class":959},[953,2164,2165],{"class":963},"loc)\n",[953,2167,2168,2170,2173,2175],{"class":955,"line":1248},[953,2169,1324],{"class":959},[953,2171,2172],{"class":963}," loc ",[953,2174,1330],{"class":959},[953,2176,1333],{"class":963},[953,2178,2179,2181,2183,2186],{"class":955,"line":1254},[953,2180,1339],{"class":1067},[953,2182,1086],{"class":959},[953,2184,2185],{"class":1074},"6",[953,2187,1165],{"class":963},[953,2189,2190,2193,2195,2198],{"class":955,"line":1260},[953,2191,2192],{"class":1067},"                rows",[953,2194,1086],{"class":959},[953,2196,2197],{"class":1074},"4",[953,2199,1165],{"class":963},[953,2201,2202,2205,2207,2209,2211,2213,2216,2218,2220,2222,2224,2227],{"class":955,"line":1266},[953,2203,2204],{"class":1067},"                item",[953,2206,1086],{"class":959},[953,2208,1363],{"class":963},[953,2210,1101],{"class":1067},[953,2212,1086],{"class":959},[953,2214,2215],{"class":1074},"10",[953,2217,1109],{"class":963},[953,2219,1112],{"class":1067},[953,2221,1086],{"class":959},[953,2223,2215],{"class":1074},[953,2225,2226],{"class":963},"),      ",[953,2228,2229],{"class":1206},"# tube footprint\n",[953,2231,2232,2235,2237,2239,2241,2243,2245,2247,2249,2251,2253,2255],{"class":955,"line":1276},[953,2233,2234],{"class":1067},"                boundary",[953,2236,1086],{"class":959},[953,2238,1363],{"class":963},[953,2240,1101],{"class":1067},[953,2242,1086],{"class":959},[953,2244,1542],{"class":1074},[953,2246,1109],{"class":963},[953,2248,1112],{"class":1067},[953,2250,1086],{"class":959},[953,2252,2085],{"class":1074},[953,2254,1242],{"class":963},[953,2256,2257],{"class":1206},"# rack footprint\n",[953,2259,2260],{"class":955,"line":1289},[953,2261,1427],{"class":963},[953,2263,2264],{"class":955,"line":1299},[953,2265,1433],{"class":963},[953,2267,2268],{"class":955,"line":1321},[953,2269,1263],{"class":963},[953,2271,2272],{"class":955,"line":1336},[953,2273,979],{"emptyLinePlaceholder":978},[953,2275,2276],{"class":955,"line":1424},[953,2277,979],{"emptyLinePlaceholder":978},[953,2279,2280],{"class":955,"line":1430},[953,2281,1058],{"class":1057},[953,2283,2284,2286,2289,2291,2293],{"class":955,"line":1436},[953,2285,1064],{"class":959},[953,2287,2288],{"class":1067}," Tube15mL",[953,2290,1071],{"class":963},[953,2292,926],{"class":1074},[953,2294,1077],{"class":963},[953,2296,2298],{"class":955,"line":2297},36,[953,2299,2300],{"class":1750},"    \"\"\"15 mL conical tube.\"\"\"\n",[953,2302,2304,2306,2308,2310,2312,2314,2316,2318,2320,2322,2324,2326,2328,2330,2332,2334,2336,2338],{"class":955,"line":2303},37,[953,2305,1083],{"class":963},[953,2307,1086],{"class":959},[953,2309,1089],{"class":963},[953,2311,1092],{"class":1067},[953,2313,1095],{"class":959},[953,2315,1098],{"class":963},[953,2317,1101],{"class":1067},[953,2319,1086],{"class":959},[953,2321,1525],{"class":1074},[953,2323,1109],{"class":963},[953,2325,1112],{"class":1067},[953,2327,1086],{"class":959},[953,2329,1525],{"class":1074},[953,2331,1109],{"class":963},[953,2333,1121],{"class":1067},[953,2335,1086],{"class":959},[953,2337,1542],{"class":1074},[953,2339,1129],{"class":963},[953,2341,2343,2345,2347,2349,2351,2353],{"class":955,"line":2342},38,[953,2344,1135],{"class":963},[953,2346,1086],{"class":959},[953,2348,1089],{"class":963},[953,2350,1092],{"class":1067},[953,2352,1086],{"class":959},[953,2354,1559],{"class":963},[953,2356,2358],{"class":955,"line":2357},39,[953,2359,979],{"emptyLinePlaceholder":978},[953,2361,2363],{"class":955,"line":2362},40,[953,2364,979],{"emptyLinePlaceholder":978},[953,2366,2368],{"class":955,"line":2367},41,[953,2369,2370],{"class":1206},"# Create and fill the rack\n",[953,2372,2374,2377,2379,2382,2385,2387],{"class":955,"line":2373},42,[953,2375,2376],{"class":963},"rack ",[953,2378,1086],{"class":959},[953,2380,2381],{"class":963}," CustomTubeRack(",[953,2383,2384],{"class":1067},"filled_with",[953,2386,1086],{"class":959},[953,2388,2389],{"class":963},"Tube15mL)\n",[920,2391,2392,2393,2396,2397,1933,2400,2402],{},"A ",[924,2394,2395],{},"Standard96TubeRack"," (of standard ANSI-SLAS footprint) is implemented and easily customizable with the ",[924,2398,2399],{},"spot_offset",[924,2401,1810],{}," parameters:",[2404,2405,2406,2412],"ul",{},[2407,2408,2409,2411],"li",{},[924,2410,2399],{},": the offset of the A1 tube spot center from the A1 corner of the rack",[2407,2413,2414,2416],{},[924,2415,1810],{},": how far into the rack (from its top plane) that tubes sit in the rack",[944,2418,2420],{"className":946,"code":2419,"language":948,"meta":949,"style":949},"import dataclasses\nimport decimal\n\nfrom unitelabs.labware import Tube, Standard96TubeRack, Vector\nfrom unitelabs.labware.liquids import Container\n\n\n@dataclasses.dataclass\nclass CustomTube(Tube):\n    \"\"\"A 2 mL Eppendorf tube.\"\"\"\n    dimensions: Vector = dataclasses.field(default_factory=lambda: Vector(7.8, 7.8, 42.5))\n    container: Container = dataclasses.field(default_factory=Container)\n\n\n@dataclasses.dataclass\nclass Custom96TubeRack(Standard96TubeRack):\n    \"\"\"96-position tube rack for 2 mL tubes.\"\"\"\n    dimensions: Vector = dataclasses.field(default_factory=lambda: Vector(z=30.4))\n    spot_offset: Vector = dataclasses.field(default_factory=lambda: Vector(x=14.7, y=11.2))\n    fitting_depth: decimal.Decimal = dataclasses.field(default_factory=lambda: decimal.Decimal(\"28.1\"))\n\n# Create a filled rack\ntube_rack = Custom96TubeRack(filled_with=CustomTube)\n",[924,2421,2422,2428,2434,2438,2449,2459,2463,2467,2471,2484,2489,2517,2531,2535,2539,2543,2556,2561,2584,2617,2636,2640,2645],{"__ignoreMap":949},[953,2423,2424,2426],{"class":955,"line":956},[953,2425,960],{"class":959},[953,2427,972],{"class":963},[953,2429,2430,2432],{"class":955,"line":967},[953,2431,960],{"class":959},[953,2433,1954],{"class":963},[953,2435,2436],{"class":955,"line":975},[953,2437,979],{"emptyLinePlaceholder":978},[953,2439,2440,2442,2444,2446],{"class":955,"line":982},[953,2441,985],{"class":959},[953,2443,988],{"class":963},[953,2445,960],{"class":959},[953,2447,2448],{"class":963}," Tube, Standard96TubeRack, Vector\n",[953,2450,2451,2453,2455,2457],{"class":955,"line":996},[953,2452,985],{"class":959},[953,2454,1474],{"class":963},[953,2456,960],{"class":959},[953,2458,1479],{"class":963},[953,2460,2461],{"class":955,"line":1002},[953,2462,979],{"emptyLinePlaceholder":978},[953,2464,2465],{"class":955,"line":1008},[953,2466,979],{"emptyLinePlaceholder":978},[953,2468,2469],{"class":955,"line":1014},[953,2470,1058],{"class":1057},[953,2472,2473,2475,2478,2480,2482],{"class":955,"line":1020},[953,2474,1064],{"class":959},[953,2476,2477],{"class":1067}," CustomTube",[953,2479,1071],{"class":963},[953,2481,926],{"class":1074},[953,2483,1077],{"class":963},[953,2485,2486],{"class":955,"line":1026},[953,2487,2488],{"class":1750},"    \"\"\"A 2 mL Eppendorf tube.\"\"\"\n",[953,2490,2491,2493,2495,2497,2499,2501,2503,2506,2508,2510,2512,2515],{"class":955,"line":1032},[953,2492,1083],{"class":963},[953,2494,1086],{"class":959},[953,2496,1089],{"class":963},[953,2498,1092],{"class":1067},[953,2500,1095],{"class":959},[953,2502,1098],{"class":963},[953,2504,2505],{"class":1074},"7.8",[953,2507,1109],{"class":963},[953,2509,2505],{"class":1074},[953,2511,1109],{"class":963},[953,2513,2514],{"class":1074},"42.5",[953,2516,1129],{"class":963},[953,2518,2519,2521,2523,2525,2527,2529],{"class":955,"line":1038},[953,2520,1135],{"class":963},[953,2522,1086],{"class":959},[953,2524,1089],{"class":963},[953,2526,1092],{"class":1067},[953,2528,1086],{"class":959},[953,2530,1559],{"class":963},[953,2532,2533],{"class":955,"line":1044},[953,2534,979],{"emptyLinePlaceholder":978},[953,2536,2537],{"class":955,"line":1049},[953,2538,979],{"emptyLinePlaceholder":978},[953,2540,2541],{"class":955,"line":1054},[953,2542,1058],{"class":1057},[953,2544,2545,2547,2550,2552,2554],{"class":955,"line":1061},[953,2546,1064],{"class":959},[953,2548,2549],{"class":1067}," Custom96TubeRack",[953,2551,1071],{"class":963},[953,2553,2395],{"class":1074},[953,2555,1077],{"class":963},[953,2557,2558],{"class":955,"line":1080},[953,2559,2560],{"class":1750},"    \"\"\"96-position tube rack for 2 mL tubes.\"\"\"\n",[953,2562,2563,2565,2567,2569,2571,2573,2575,2577,2579,2582],{"class":955,"line":1132},[953,2564,1083],{"class":963},[953,2566,1086],{"class":959},[953,2568,1089],{"class":963},[953,2570,1092],{"class":1067},[953,2572,1095],{"class":959},[953,2574,1098],{"class":963},[953,2576,1121],{"class":1067},[953,2578,1086],{"class":959},[953,2580,2581],{"class":1074},"30.4",[953,2583,1129],{"class":963},[953,2585,2586,2589,2591,2593,2595,2597,2599,2601,2603,2606,2608,2610,2612,2615],{"class":955,"line":1143},[953,2587,2588],{"class":963},"    spot_offset: Vector ",[953,2590,1086],{"class":959},[953,2592,1089],{"class":963},[953,2594,1092],{"class":1067},[953,2596,1095],{"class":959},[953,2598,1098],{"class":963},[953,2600,1101],{"class":1067},[953,2602,1086],{"class":959},[953,2604,2605],{"class":1074},"14.7",[953,2607,1109],{"class":963},[953,2609,1112],{"class":1067},[953,2611,1086],{"class":959},[953,2613,2614],{"class":1074},"11.2",[953,2616,1129],{"class":963},[953,2618,2619,2621,2623,2625,2627,2629,2631,2634],{"class":955,"line":1154},[953,2620,2101],{"class":963},[953,2622,1086],{"class":959},[953,2624,1089],{"class":963},[953,2626,1092],{"class":1067},[953,2628,1095],{"class":959},[953,2630,2112],{"class":963},[953,2632,2633],{"class":1750},"\"28.1\"",[953,2635,1129],{"class":963},[953,2637,2638],{"class":955,"line":1168},[953,2639,979],{"emptyLinePlaceholder":978},[953,2641,2642],{"class":955,"line":1179},[953,2643,2644],{"class":1206},"# Create a filled rack\n",[953,2646,2647,2650,2652,2655,2657,2659],{"class":955,"line":1210},[953,2648,2649],{"class":963},"tube_rack ",[953,2651,1086],{"class":959},[953,2653,2654],{"class":963}," Custom96TubeRack(",[953,2656,2384],{"class":1067},[953,2658,1086],{"class":959},[953,2660,2661],{"class":963},"CustomTube)\n",[2663,2664,2666],"h3",{"id":2665},"accessing-tubes","Accessing Tubes",[920,2668,2669,2670,2672,2673,2676],{},"Any ",[924,2671,1918],{}," provides a convenient way to access tubes in the rack using ",[924,2674,2675],{},".tubes",":",[944,2678,2680],{"className":946,"code":2679,"language":948,"meta":949,"style":949},"tubes = tube_rack.tubes\nfor tube in tubes:\n    print(tube.container.volume)  # Volume of the tube\n    print(tube.lid)  # Lid of the tube, if any\n",[924,2681,2682,2692,2705,2716],{"__ignoreMap":949},[953,2683,2684,2687,2689],{"class":955,"line":956},[953,2685,2686],{"class":963},"tubes ",[953,2688,1086],{"class":959},[953,2690,2691],{"class":963}," tube_rack.tubes\n",[953,2693,2694,2697,2700,2702],{"class":955,"line":967},[953,2695,2696],{"class":959},"for",[953,2698,2699],{"class":963}," tube ",[953,2701,1330],{"class":959},[953,2703,2704],{"class":963}," tubes:\n",[953,2706,2707,2710,2713],{"class":955,"line":975},[953,2708,2709],{"class":1074},"    print",[953,2711,2712],{"class":963},"(tube.container.volume)  ",[953,2714,2715],{"class":1206},"# Volume of the tube\n",[953,2717,2718,2720,2723],{"class":955,"line":982},[953,2719,2709],{"class":1074},[953,2721,2722],{"class":963},"(tube.lid)  ",[953,2724,2725],{"class":1206},"# Lid of the tube, if any\n",[920,2727,2728],{},"One can access tubes by their well position or numerical (column-major) index:",[944,2730,2732],{"className":946,"code":2731,"language":948,"meta":949,"style":949},"# Access tubes by well position\ntube = tube_rack.tubes[\"A1\"]\ntube = tube_rack.tubes[\"A2\":\"H2\"]\ntube = tube_rack.tubes[\"A7\":]\n\n# Access tubes by numerical index\ntube = tube_rack.tubes[0]  # First tube (A1)\ntube = tube_rack.tubes[0:8]  # First column (A1:H1)\n",[924,2733,2734,2739,2754,2772,2786,2790,2795,2812],{"__ignoreMap":949},[953,2735,2736],{"class":955,"line":956},[953,2737,2738],{"class":1206},"# Access tubes by well position\n",[953,2740,2741,2743,2745,2748,2751],{"class":955,"line":967},[953,2742,1775],{"class":963},[953,2744,1086],{"class":959},[953,2746,2747],{"class":963}," tube_rack.tubes[",[953,2749,2750],{"class":1750},"\"A1\"",[953,2752,2753],{"class":963},"]\n",[953,2755,2756,2758,2760,2762,2765,2767,2770],{"class":955,"line":975},[953,2757,1775],{"class":963},[953,2759,1086],{"class":959},[953,2761,2747],{"class":963},[953,2763,2764],{"class":1750},"\"A2\"",[953,2766,2676],{"class":963},[953,2768,2769],{"class":1750},"\"H2\"",[953,2771,2753],{"class":963},[953,2773,2774,2776,2778,2780,2783],{"class":955,"line":982},[953,2775,1775],{"class":963},[953,2777,1086],{"class":959},[953,2779,2747],{"class":963},[953,2781,2782],{"class":1750},"\"A7\"",[953,2784,2785],{"class":963},":]\n",[953,2787,2788],{"class":955,"line":996},[953,2789,979],{"emptyLinePlaceholder":978},[953,2791,2792],{"class":955,"line":1002},[953,2793,2794],{"class":1206},"# Access tubes by numerical index\n",[953,2796,2797,2799,2801,2803,2806,2809],{"class":955,"line":1008},[953,2798,1775],{"class":963},[953,2800,1086],{"class":959},[953,2802,2747],{"class":963},[953,2804,2805],{"class":1074},"0",[953,2807,2808],{"class":963},"]  ",[953,2810,2811],{"class":1206},"# First tube (A1)\n",[953,2813,2814,2816,2818,2820,2822,2824,2826,2828],{"class":955,"line":1014},[953,2815,1775],{"class":963},[953,2817,1086],{"class":959},[953,2819,2747],{"class":963},[953,2821,2805],{"class":1074},[953,2823,2676],{"class":963},[953,2825,1712],{"class":1074},[953,2827,2808],{"class":963},[953,2829,2830],{"class":1206},"# First column (A1:H1)\n",[920,2832,2833,2834,2837,2838,2840,2841,2843,2844,2846,2847,2850,2851,2676],{},"It is ",[932,2835,2836],{},"essential"," to note that since ",[924,2839,1922],{},"s can be empty, calling ",[924,2842,2675],{}," over a slice of ",[924,2845,1922],{},"s may return fewer tubes than the number of spots searched! When necessary, one can enforce that tubes are present in all spots by using ",[924,2848,2849],{},".tubes.strict",", following the same pattern as ",[924,2852,2675],{},[944,2854,2856],{"className":946,"code":2855,"language":948,"meta":949,"style":949},"tubes = tube_rack.tubes.strict  # Raises IndexError if any spot is empty on the rack\n\n# Access tubes by well position as with .tubes\ntube = tube_rack.tubes.strict[\"A2\":\"H2\"]  # Raises IndexError if any spot is empty\ntube = tube_rack.tubes.strict[9:16]  # Raises IndexError if any spot is empty\n",[924,2857,2858,2870,2874,2879,2899],{"__ignoreMap":949},[953,2859,2860,2862,2864,2867],{"class":955,"line":956},[953,2861,2686],{"class":963},[953,2863,1086],{"class":959},[953,2865,2866],{"class":963}," tube_rack.tubes.strict  ",[953,2868,2869],{"class":1206},"# Raises IndexError if any spot is empty on the rack\n",[953,2871,2872],{"class":955,"line":967},[953,2873,979],{"emptyLinePlaceholder":978},[953,2875,2876],{"class":955,"line":975},[953,2877,2878],{"class":1206},"# Access tubes by well position as with .tubes\n",[953,2880,2881,2883,2885,2888,2890,2892,2894,2896],{"class":955,"line":982},[953,2882,1775],{"class":963},[953,2884,1086],{"class":959},[953,2886,2887],{"class":963}," tube_rack.tubes.strict[",[953,2889,2764],{"class":1750},[953,2891,2676],{"class":963},[953,2893,2769],{"class":1750},[953,2895,2808],{"class":963},[953,2897,2898],{"class":1206},"# Raises IndexError if any spot is empty\n",[953,2900,2901,2903,2905,2907,2909,2911,2914,2916],{"class":955,"line":996},[953,2902,1775],{"class":963},[953,2904,1086],{"class":959},[953,2906,2887],{"class":963},[953,2908,1370],{"class":1074},[953,2910,2676],{"class":963},[953,2912,2913],{"class":1074},"16",[953,2915,2808],{"class":963},[953,2917,2898],{"class":1206},[2663,2919,2921],{"id":2920},"convenience-methods","Convenience Methods",[920,2923,2924,1109,2927,2930],{},[924,2925,2926],{},".filled_spots",[924,2928,2929],{},".empty_spots",": quickly find filled or empty spots in a tube rack:",[944,2932,2934],{"className":946,"code":2933,"language":948,"meta":949,"style":949},"filled_spots = tube_rack.filled_spots\nempty_spots = tube_rack.empty_spots\n\n# Print filled spot labels\nfor spot in filled_spots:\n    print(spot.well_label)\n\n# Print empty spot labels\nfor spot in empty_spots:\n    print(spot.well_label)\n",[924,2935,2936,2946,2956,2960,2965,2977,2984,2988,2993,3004],{"__ignoreMap":949},[953,2937,2938,2941,2943],{"class":955,"line":956},[953,2939,2940],{"class":963},"filled_spots ",[953,2942,1086],{"class":959},[953,2944,2945],{"class":963}," tube_rack.filled_spots\n",[953,2947,2948,2951,2953],{"class":955,"line":967},[953,2949,2950],{"class":963},"empty_spots ",[953,2952,1086],{"class":959},[953,2954,2955],{"class":963}," tube_rack.empty_spots\n",[953,2957,2958],{"class":955,"line":975},[953,2959,979],{"emptyLinePlaceholder":978},[953,2961,2962],{"class":955,"line":982},[953,2963,2964],{"class":1206},"# Print filled spot labels\n",[953,2966,2967,2969,2972,2974],{"class":955,"line":996},[953,2968,2696],{"class":959},[953,2970,2971],{"class":963}," spot ",[953,2973,1330],{"class":959},[953,2975,2976],{"class":963}," filled_spots:\n",[953,2978,2979,2981],{"class":955,"line":1002},[953,2980,2709],{"class":1074},[953,2982,2983],{"class":963},"(spot.well_label)\n",[953,2985,2986],{"class":955,"line":1008},[953,2987,979],{"emptyLinePlaceholder":978},[953,2989,2990],{"class":955,"line":1014},[953,2991,2992],{"class":1206},"# Print empty spot labels\n",[953,2994,2995,2997,2999,3001],{"class":955,"line":1020},[953,2996,2696],{"class":959},[953,2998,2971],{"class":963},[953,3000,1330],{"class":959},[953,3002,3003],{"class":963}," empty_spots:\n",[953,3005,3006,3008],{"class":955,"line":1026},[953,3007,2709],{"class":1074},[953,3009,2983],{"class":963},[920,3011,3012,3015],{},[924,3013,3014],{},".any_caps",": quickly find if a tube rack has any caps:",[944,3017,3019],{"className":946,"code":3018,"language":948,"meta":949,"style":949},"if tube_rack.any_caps:\n    print(\"The tube rack has at least one cap.\")\n",[924,3020,3021,3029],{"__ignoreMap":949},[953,3022,3023,3026],{"class":955,"line":956},[953,3024,3025],{"class":959},"if",[953,3027,3028],{"class":963}," tube_rack.any_caps:\n",[953,3030,3031,3033,3035,3038],{"class":955,"line":967},[953,3032,2709],{"class":1074},[953,3034,1071],{"class":963},[953,3036,3037],{"class":1750},"\"The tube rack has at least one cap.\"",[953,3039,1041],{"class":963},[920,3041,3042,3045],{},[924,3043,3044],{},".height",": get the current effective height of the rack, accounting for:",[2404,3047,3048,3051],{},[2407,3049,3050],{},"Presence of tubes in the rack (adjusted by the rack's fitting depth)",[2407,3052,3053],{},"Presence of caps on tubes (adjusted by the cap's fitting depth)",[944,3055,3057],{"className":946,"code":3056,"language":948,"meta":949,"style":949},"empty_rack = Standard96TubeRack(dimensions=Vector(z=50.0))\nprint(empty_rack.height)  # empty_rack.dimensions.z\n\nfilled_rack = Standard96TubeRack(\n  filled_with=Tube(dimensions=Vector(x=9.0, y=9.0, z=30.0)),\n  fitting_depth=25.0\n)\nprint(filled_rack.height)  #  filled_rack.dimensions.z + Tube.dimensions.z - filled_rack.fitting_depth\n\ncap = Cap(\n  dimensions=Vector(x=10.0, y=10.0, z=5.0),\n  fitting_depth=3.0\n)\nfilled_rack.tubes[\"A1\"].close(cap)\nprint(filled_rack.height) # filled_rack.dimensions.z + Tube.dimensions.z - filled_rack.fitting_depth + cap.dimensions.z - cap.fitting_depth\n",[924,3058,3059,3084,3095,3099,3109,3152,3162,3166,3176,3180,3189,3225,3234,3238,3248],{"__ignoreMap":949},[953,3060,3061,3064,3066,3069,3071,3073,3075,3077,3079,3082],{"class":955,"line":956},[953,3062,3063],{"class":963},"empty_rack ",[953,3065,1086],{"class":959},[953,3067,3068],{"class":963}," Standard96TubeRack(",[953,3070,1305],{"class":1067},[953,3072,1086],{"class":959},[953,3074,1363],{"class":963},[953,3076,1121],{"class":1067},[953,3078,1086],{"class":959},[953,3080,3081],{"class":1074},"50.0",[953,3083,1129],{"class":963},[953,3085,3086,3089,3092],{"class":955,"line":967},[953,3087,3088],{"class":1074},"print",[953,3090,3091],{"class":963},"(empty_rack.height)  ",[953,3093,3094],{"class":1206},"# empty_rack.dimensions.z\n",[953,3096,3097],{"class":955,"line":975},[953,3098,979],{"emptyLinePlaceholder":978},[953,3100,3101,3104,3106],{"class":955,"line":982},[953,3102,3103],{"class":963},"filled_rack ",[953,3105,1086],{"class":959},[953,3107,3108],{"class":963}," Standard96TubeRack(\n",[953,3110,3111,3114,3116,3119,3121,3123,3125,3127,3129,3132,3134,3136,3138,3140,3142,3144,3146,3149],{"class":955,"line":996},[953,3112,3113],{"class":1067},"  filled_with",[953,3115,1086],{"class":959},[953,3117,3118],{"class":963},"Tube(",[953,3120,1305],{"class":1067},[953,3122,1086],{"class":959},[953,3124,1363],{"class":963},[953,3126,1101],{"class":1067},[953,3128,1086],{"class":959},[953,3130,3131],{"class":1074},"9.0",[953,3133,1109],{"class":963},[953,3135,1112],{"class":1067},[953,3137,1086],{"class":959},[953,3139,3131],{"class":1074},[953,3141,1109],{"class":963},[953,3143,1121],{"class":1067},[953,3145,1086],{"class":959},[953,3147,3148],{"class":1074},"30.0",[953,3150,3151],{"class":963},")),\n",[953,3153,3154,3157,3159],{"class":955,"line":1002},[953,3155,3156],{"class":1067},"  fitting_depth",[953,3158,1086],{"class":959},[953,3160,3161],{"class":1074},"25.0\n",[953,3163,3164],{"class":955,"line":1008},[953,3165,1041],{"class":963},[953,3167,3168,3170,3173],{"class":955,"line":1014},[953,3169,3088],{"class":1074},[953,3171,3172],{"class":963},"(filled_rack.height)  ",[953,3174,3175],{"class":1206},"#  filled_rack.dimensions.z + Tube.dimensions.z - filled_rack.fitting_depth\n",[953,3177,3178],{"class":955,"line":1020},[953,3179,979],{"emptyLinePlaceholder":978},[953,3181,3182,3184,3186],{"class":955,"line":1026},[953,3183,1861],{"class":963},[953,3185,1086],{"class":959},[953,3187,3188],{"class":963}," Cap(\n",[953,3190,3191,3194,3196,3198,3200,3202,3205,3207,3209,3211,3213,3215,3217,3219,3222],{"class":955,"line":1032},[953,3192,3193],{"class":1067},"  dimensions",[953,3195,1086],{"class":959},[953,3197,1363],{"class":963},[953,3199,1101],{"class":1067},[953,3201,1086],{"class":959},[953,3203,3204],{"class":1074},"10.0",[953,3206,1109],{"class":963},[953,3208,1112],{"class":1067},[953,3210,1086],{"class":959},[953,3212,3204],{"class":1074},[953,3214,1109],{"class":963},[953,3216,1121],{"class":1067},[953,3218,1086],{"class":959},[953,3220,3221],{"class":1074},"5.0",[953,3223,3224],{"class":963},"),\n",[953,3226,3227,3229,3231],{"class":955,"line":1038},[953,3228,3156],{"class":1067},[953,3230,1086],{"class":959},[953,3232,3233],{"class":1074},"3.0\n",[953,3235,3236],{"class":955,"line":1044},[953,3237,1041],{"class":963},[953,3239,3240,3243,3245],{"class":955,"line":1049},[953,3241,3242],{"class":963},"filled_rack.tubes[",[953,3244,2750],{"class":1750},[953,3246,3247],{"class":963},"].close(cap)\n",[953,3249,3250,3252,3255],{"class":955,"line":1054},[953,3251,3088],{"class":1074},[953,3253,3254],{"class":963},"(filled_rack.height) ",[953,3256,3257],{"class":1206},"# filled_rack.dimensions.z + Tube.dimensions.z - filled_rack.fitting_depth + cap.dimensions.z - cap.fitting_depth\n",[2663,3259,345],{"id":3260},"liquid-handling",[920,3262,3263,3264,3266],{},"One can flexibly provide ",[924,3265,1918],{}," objects to liquid handling operations:",[944,3268,3270],{"className":946,"code":3269,"language":948,"meta":949,"style":949},"lhs.pipettes.aspirate(tube_rack) # Targets the first present tubes in the rack with column-major searching\n\nlhs.pipettes.dispense(tube_rack.tubes[\"A6\":\"H6\"]) # Target tubes present from A6-H6 on the rack\n\nlhs.pipettes.aspirate(tube_rack.tubes.strict[\"A6\":\"H6\"]) # Target tubes present from A6-H6 on the rack, raising an error if any spot is empty\n\nlhs.core96.aspirate(tube_rack) # Target all tubes in the rack. Note that for a 96-channel head, tubes must be arranged in a compatible layout on the rack!\n",[924,3271,3272,3280,3284,3303,3307,3323,3327],{"__ignoreMap":949},[953,3273,3274,3277],{"class":955,"line":956},[953,3275,3276],{"class":963},"lhs.pipettes.aspirate(tube_rack) ",[953,3278,3279],{"class":1206},"# Targets the first present tubes in the rack with column-major searching\n",[953,3281,3282],{"class":955,"line":967},[953,3283,979],{"emptyLinePlaceholder":978},[953,3285,3286,3289,3292,3294,3297,3300],{"class":955,"line":975},[953,3287,3288],{"class":963},"lhs.pipettes.dispense(tube_rack.tubes[",[953,3290,3291],{"class":1750},"\"A6\"",[953,3293,2676],{"class":963},[953,3295,3296],{"class":1750},"\"H6\"",[953,3298,3299],{"class":963},"]) ",[953,3301,3302],{"class":1206},"# Target tubes present from A6-H6 on the rack\n",[953,3304,3305],{"class":955,"line":982},[953,3306,979],{"emptyLinePlaceholder":978},[953,3308,3309,3312,3314,3316,3318,3320],{"class":955,"line":996},[953,3310,3311],{"class":963},"lhs.pipettes.aspirate(tube_rack.tubes.strict[",[953,3313,3291],{"class":1750},[953,3315,2676],{"class":963},[953,3317,3296],{"class":1750},[953,3319,3299],{"class":963},[953,3321,3322],{"class":1206},"# Target tubes present from A6-H6 on the rack, raising an error if any spot is empty\n",[953,3324,3325],{"class":955,"line":1002},[953,3326,979],{"emptyLinePlaceholder":978},[953,3328,3329,3332],{"class":955,"line":1008},[953,3330,3331],{"class":963},"lhs.core96.aspirate(tube_rack) ",[953,3333,3334],{"class":1206},"# Target all tubes in the rack. Note that for a 96-channel head, tubes must be arranged in a compatible layout on the rack!\n",[920,3336,3337,3338,3341],{},"See ",[3339,3340,617],"a",{"href":618}," for more information on liquid handling operations.",[3343,3344,3345],"style",{},"html pre.shiki code .sxkbv, html code.shiki .sxkbv{--shiki-light:#A0111F;--shiki-default:#A0111F;--shiki-dark:#FF7B72}html pre.shiki code .sc-9e, html code.shiki .sc-9e{--shiki-light:#0E1116;--shiki-default:#0E1116;--shiki-dark:#E6EDF3}html pre.shiki code .s4qFZ, html code.shiki .s4qFZ{--shiki-light:#622CBC;--shiki-default:#622CBC;--shiki-dark:#D2A8FF}html pre.shiki code .sNqAu, html code.shiki .sNqAu{--shiki-light:#702C00;--shiki-default:#702C00;--shiki-dark:#FFA657}html pre.shiki code .sOiAX, html code.shiki .sOiAX{--shiki-light:#023B95;--shiki-default:#023B95;--shiki-dark:#79C0FF}html pre.shiki code .sIsDC, html code.shiki .sIsDC{--shiki-light:#66707B;--shiki-default:#66707B;--shiki-dark:#8B949E}html .light .shiki span {color: var(--shiki-light);background: var(--shiki-light-bg);font-style: var(--shiki-light-font-style);font-weight: var(--shiki-light-font-weight);text-decoration: var(--shiki-light-text-decoration);}html.light .shiki span {color: var(--shiki-light);background: var(--shiki-light-bg);font-style: var(--shiki-light-font-style);font-weight: var(--shiki-light-font-weight);text-decoration: var(--shiki-light-text-decoration);}html .default .shiki span {color: var(--shiki-default);background: var(--shiki-default-bg);font-style: var(--shiki-default-font-style);font-weight: var(--shiki-default-font-weight);text-decoration: var(--shiki-default-text-decoration);}html .shiki span {color: var(--shiki-default);background: var(--shiki-default-bg);font-style: var(--shiki-default-font-style);font-weight: var(--shiki-default-font-weight);text-decoration: var(--shiki-default-text-decoration);}html .dark .shiki span {color: var(--shiki-dark);background: var(--shiki-dark-bg);font-style: var(--shiki-dark-font-style);font-weight: var(--shiki-dark-font-weight);text-decoration: var(--shiki-dark-text-decoration);}html.dark .shiki span {color: var(--shiki-dark);background: var(--shiki-dark-bg);font-style: var(--shiki-dark-font-style);font-weight: var(--shiki-dark-font-weight);text-decoration: var(--shiki-dark-text-decoration);}html pre.shiki code .sCx38, html code.shiki .sCx38{--shiki-light:#032563;--shiki-default:#032563;--shiki-dark:#A5D6FF}",{"title":949,"searchDepth":956,"depth":967,"links":3347},[3348,3349,3350],{"id":917,"depth":967,"text":918},{"id":1628,"depth":967,"text":1629},{"id":1912,"depth":967,"text":1913,"children":3351},[3352,3353,3354],{"id":2665,"depth":975,"text":2666},{"id":2920,"depth":975,"text":2921},{"id":3260,"depth":975,"text":345},"Define custom tubes and tube racks using the Tube and TubeRack base classes.","md",{},"\u002Flabware\u002Ftubes-and-tube-racks",{"title":780,"description":3355},"Dt0t51jha1FGIGbVxm1GVQVKnGpv4p8Tz97oThiRdng",[3362,3364],{"title":776,"description":3363,"path":777},"Define custom tip types and tip racks for Hamilton liquid handlers.",{"title":784,"description":3365,"path":785},"Define custom reagent troughs using the Trough base class.",1791294191376]