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in the Loop","\u002Fautomate\u002Fconcepts\u002Fhuman-in-the-loop","07.automate\u002F10.concepts\u002F80.human-in-the-loop",{"title":183,"path":492,"stem":493},"\u002Fautomate\u002Fconcepts\u002Ferror-handling","07.automate\u002F10.concepts\u002F90.error-handling",{"title":187,"path":495,"stem":496,"children":497,"page":42},"\u002Fautomate\u002Fguides","07.automate\u002F25.guides",[498,502,506,510,514,518,522,526],{"title":499,"path":500,"stem":501},"Deploy a workflow","\u002Fautomate\u002Fguides\u002Fdeploy-a-workflow","07.automate\u002F25.guides\u002F30.deploy-a-workflow",{"title":503,"path":504,"stem":505},"Run a workflow","\u002Fautomate\u002Fguides\u002Frun-a-workflow","07.automate\u002F25.guides\u002F35.run-a-workflow",{"title":507,"path":508,"stem":509},"CI\u002FCD for workflows","\u002Fautomate\u002Fguides\u002Fcicd-for-workflows","07.automate\u002F25.guides\u002F40.cicd-for-workflows",{"title":511,"path":512,"stem":513},"HITL basics","\u002Fautomate\u002Fguides\u002Fbasic-hitl","07.automate\u002F25.guides\u002F50.basic-hitl",{"title":515,"path":516,"stem":517},"Typed operator inputs","\u002Fautomate\u002Fguides\u002Ftyped-operator-inputs","07.automate\u002F25.guides\u002F55.typed-operator-inputs",{"title":519,"path":520,"stem":521},"Error recovery","\u002Fautomate\u002Fguides\u002Fbasic-error-handling","07.automate\u002F25.guides\u002F60.basic-error-handling",{"title":523,"path":524,"stem":525},"Advanced error handling","\u002Fautomate\u002Fguides\u002Fadvanced-error-handling","07.automate\u002F25.guides\u002F70.advanced-error-handling",{"title":527,"path":528,"stem":529},"Workflows REST API","\u002Fautomate\u002Fguides\u002Fworkflows-api","07.automate\u002F25.guides\u002F80.workflows-api",{"title":531,"path":532,"stem":533,"children":534,"page":42},"Observe","\u002Fobserve","08.observe",[535,539,555],{"title":536,"path":537,"stem":538},"Overview","\u002Fobserve\u002Foverview","08.observe\u002F10.overview",{"title":94,"path":540,"stem":541,"children":542,"page":42},"\u002Fobserve\u002Fconcepts","08.observe\u002F20.concepts",[543,547,551],{"title":544,"path":545,"stem":546},"Object Storage","\u002Fobserve\u002Fconcepts\u002Fstorage","08.observe\u002F20.concepts\u002F10.storage",{"title":548,"path":549,"stem":550},"Secrets","\u002Fobserve\u002Fconcepts\u002Fsecrets","08.observe\u002F20.concepts\u002F20.secrets",{"title":552,"path":553,"stem":554},"Data sources","\u002Fobserve\u002Fconcepts\u002Fdata-sources","08.observe\u002F20.concepts\u002F30.data-sources",{"title":187,"path":556,"stem":557,"children":558,"page":42},"\u002Fobserve\u002Fguides","08.observe\u002F30.guides",[559,563],{"title":560,"path":561,"stem":562},"File System Connector","\u002Fobserve\u002Fguides\u002Ffilesystem-connector","08.observe\u002F30.guides\u002F10.filesystem-connector",{"title":564,"path":565,"stem":566},"Building an ETL","\u002Fobserve\u002Fguides\u002Fbuilding-an-etl","08.observe\u002F30.guides\u002F20.building-an-etl",{"title":568,"path":569,"stem":570,"children":571,"page":42},"Technical Reference","\u002Ftechnical-reference","10.technical-reference",[572,576,580,592,603,614,624,635],{"title":573,"path":574,"stem":575},"Introduction","\u002Ftechnical-reference\u002Fplatform-blueprint","10.technical-reference\u002F00.platform-blueprint",{"title":577,"path":578,"stem":579},"REST API","\u002Ftechnical-reference\u002Frest-api","10.technical-reference\u002F01.rest-api",{"title":53,"path":581,"stem":582,"children":583,"page":42},"\u002Ftechnical-reference\u002Fgroundcontrol","10.technical-reference\u002F10.groundcontrol",[584,588],{"title":585,"path":586,"stem":587},"Install & Setup","\u002Ftechnical-reference\u002Fgroundcontrol\u002Finstall","10.technical-reference\u002F10.groundcontrol\u002F10.install",{"title":589,"path":590,"stem":591},"Changelog","\u002Ftechnical-reference\u002Fgroundcontrol\u002Fchangelog","10.technical-reference\u002F10.groundcontrol\u002F20.changelog",{"title":593,"path":594,"stem":595,"children":596,"page":42},"UniteLabs SDK","\u002Ftechnical-reference\u002Fpython-sdk","10.technical-reference\u002F20.python-sdk",[597,600],{"title":585,"path":598,"stem":599},"\u002Ftechnical-reference\u002Fpython-sdk\u002Finstall","10.technical-reference\u002F20.python-sdk\u002F10.install",{"title":589,"path":601,"stem":602},"\u002Ftechnical-reference\u002Fpython-sdk\u002Fchangelog","10.technical-reference\u002F20.python-sdk\u002F20.changelog",{"title":604,"path":605,"stem":606,"children":607,"page":42},"Liquid Handling SDK","\u002Ftechnical-reference\u002Fpython-liquid-handling-sdk","10.technical-reference\u002F30.python-liquid-handling-sdk",[608,611],{"title":585,"path":609,"stem":610},"\u002Ftechnical-reference\u002Fpython-liquid-handling-sdk\u002Finstall","10.technical-reference\u002F30.python-liquid-handling-sdk\u002F10.install",{"title":589,"path":612,"stem":613},"\u002Ftechnical-reference\u002Fpython-liquid-handling-sdk\u002Fchangelog","10.technical-reference\u002F30.python-liquid-handling-sdk\u002F20.changelog",{"title":163,"path":615,"stem":616,"children":617,"page":42},"\u002Ftechnical-reference\u002Flabware","10.technical-reference\u002F40.labware",[618,621],{"title":585,"path":619,"stem":620},"\u002Ftechnical-reference\u002Flabware\u002Finstall","10.technical-reference\u002F40.labware\u002F10.install",{"title":589,"path":622,"stem":623},"\u002Ftechnical-reference\u002Flabware\u002Fchangelog","10.technical-reference\u002F40.labware\u002F20.changelog",{"title":625,"path":626,"stem":627,"children":628,"page":42},"Python Omnibus","\u002Ftechnical-reference\u002Fpython-omnibus","10.technical-reference\u002F50.python-omnibus",[629,632],{"title":585,"path":630,"stem":631},"\u002Ftechnical-reference\u002Fpython-omnibus\u002Finstall","10.technical-reference\u002F50.python-omnibus\u002F10.install",{"title":589,"path":633,"stem":634},"\u002Ftechnical-reference\u002Fpython-omnibus\u002Fchangelog","10.technical-reference\u002F50.python-omnibus\u002F20.changelog",{"title":636,"path":637,"stem":638,"children":639,"page":42},"Python CDK","\u002Ftechnical-reference\u002Fpython-cdk","10.technical-reference\u002F60.python-cdk",[640,643],{"title":585,"path":641,"stem":642},"\u002Ftechnical-reference\u002Fpython-cdk\u002Finstall","10.technical-reference\u002F60.python-cdk\u002F10.install",{"title":589,"path":644,"stem":645},"\u002Ftechnical-reference\u002Fpython-cdk\u002Fchangelog","10.technical-reference\u002F60.python-cdk\u002F20.changelog",{"title":647,"path":648,"stem":649,"children":650},"Connector Development (CDK)","\u002Fconnector-development","20.connector-development",[651,653,672,705,713,744],{"title":647,"path":648,"stem":652},"20.connector-development\u002Findex",{"title":654,"path":655,"stem":656,"children":657,"page":42},"Getting Started","\u002Fconnector-development\u002Fgetting-started","20.connector-development\u002F10.getting-started",[658,661,665,668],{"title":536,"path":659,"stem":660},"\u002Fconnector-development\u002Fgetting-started\u002Foverview","20.connector-development\u002F10.getting-started\u002F10.overview",{"title":662,"path":663,"stem":664},"What's new","\u002Fconnector-development\u002Fgetting-started\u002Fwhats-new","20.connector-development\u002F10.getting-started\u002F20.whats-new",{"title":77,"path":666,"stem":667},"\u002Fconnector-development\u002Fgetting-started\u002Finstallation","20.connector-development\u002F10.getting-started\u002F30.installation",{"title":669,"path":670,"stem":671},"Contributing","\u002Fconnector-development\u002Fgetting-started\u002Fcontributing","20.connector-development\u002F10.getting-started\u002F40.contributing",{"title":673,"path":674,"stem":675,"children":676,"page":42},"Tutorial","\u002Fconnector-development\u002Ftutorial","20.connector-development\u002F20.tutorial",[677,681,685,689,693,697,701],{"title":678,"path":679,"stem":680},"Walkthrough","\u002Fconnector-development\u002Ftutorial\u002Fwalkthrough","20.connector-development\u002F20.tutorial\u002F00.walkthrough",{"title":682,"path":683,"stem":684},"SiLA Endpoints","\u002Fconnector-development\u002Ftutorial\u002Fsila-endpoints","20.connector-development\u002F20.tutorial\u002F10.sila-endpoints",{"title":686,"path":687,"stem":688},"Data Endpoints","\u002Fconnector-development\u002Ftutorial\u002Fdata-endpoints","20.connector-development\u002F20.tutorial\u002F20.data-endpoints",{"title":690,"path":691,"stem":692},"Controls","\u002Fconnector-development\u002Ftutorial\u002Fcontrols","20.connector-development\u002F20.tutorial\u002F30.controls",{"title":694,"path":695,"stem":696},"SiLA Data Types","\u002Fconnector-development\u002Ftutorial\u002Fdata-types","20.connector-development\u002F20.tutorial\u002F40.data-types",{"title":698,"path":699,"stem":700},"Feature","\u002Fconnector-development\u002Ftutorial\u002Fconnector-structure","20.connector-development\u002F20.tutorial\u002F70.connector-structure",{"title":702,"path":703,"stem":704},"Hardware Communication","\u002Fconnector-development\u002Ftutorial\u002Fhardware-communication","20.connector-development\u002F20.tutorial\u002F90.hardware-communication",{"title":94,"path":706,"stem":707,"children":708,"page":42},"\u002Fconnector-development\u002Fconcepts","20.connector-development\u002F30.concepts",[709],{"title":710,"path":711,"stem":712},"SiLA","\u002Fconnector-development\u002Fconcepts\u002Fsila","20.connector-development\u002F30.concepts\u002Fsila",{"title":187,"path":714,"stem":715,"children":716,"page":42},"\u002Fconnector-development\u002Fguides","20.connector-development\u002F40.guides",[717,721,725,729,733,736,740],{"title":718,"path":719,"stem":720},"Configuration","\u002Fconnector-development\u002Fguides\u002Fconfiguration","20.connector-development\u002F40.guides\u002F20.configuration",{"title":722,"path":723,"stem":724},"Deployment","\u002Fconnector-development\u002Fguides\u002Fdeployment","20.connector-development\u002F40.guides\u002F30.deployment",{"title":726,"path":727,"stem":728},"Security","\u002Fconnector-development\u002Fguides\u002Fsecurity","20.connector-development\u002F40.guides\u002F40.security",{"title":730,"path":731,"stem":732},"Subscriptions","\u002Fconnector-development\u002Fguides\u002Fsubscriptions","20.connector-development\u002F40.guides\u002F45.subscriptions",{"title":183,"path":734,"stem":735},"\u002Fconnector-development\u002Fguides\u002Ferror-handling","20.connector-development\u002F40.guides\u002F50.error-handling",{"title":737,"path":738,"stem":739},"Serial Troubleshooting","\u002Fconnector-development\u002Fguides\u002Fserial-troubleshooting","20.connector-development\u002F40.guides\u002F70.serial-troubleshooting",{"title":741,"path":742,"stem":743},"Testing","\u002Fconnector-development\u002Fguides\u002Ftesting","20.connector-development\u002F40.guides\u002F80.testing",{"title":745,"path":746,"stem":747,"children":748},"References","\u002Fconnector-development\u002Freference","20.connector-development\u002F50.reference\u002Findex",[749],{"title":745,"path":746,"stem":747},{"id":751,"title":179,"body":752,"description":1059,"extension":1060,"links":1061,"meta":1062,"navigation":827,"path":180,"seo":1063,"stem":181,"__hash__":1064},"docs\u002F03.operate\u002F10.concepts\u002F80.simulation.md",{"type":753,"value":754,"toc":1052},"minimark",[755,759,782,852,857,860,895,898,902,905,931,934,938,941,944,948,951,1026,1029,1033,1048],[756,757,758],"p",{},"Every liquid handler class has a matching mock. The mock has the same interface as the real device (same methods, same deck API, same liquid tracking) but executes locally, without network calls and without touching hardware. You can run a full protocol against a mock and inspect every well's volume when it is done.",[756,760,761,762,766,767,770,771,774,775,778,779,781],{},"Mocks are available for each supported handler — ",[763,764,765],"code",{},"MicrolabSTARMock",", ",[763,768,769],{},"BravoMock",", and so on — all importable from ",[763,772,773],{},"unitelabs.liquid_handling.testing",". They are drop-in replacements: swap ",[763,776,777],{},"MicrolabSTAR"," for ",[763,780,765],{}," and the rest of your protocol code is unchanged.",[783,784,789],"pre",{"className":785,"code":786,"language":787,"meta":788,"style":788},"language-python shiki shiki-themes material-theme-lighter material-theme material-theme-palenight","from unitelabs.liquid_handling.testing import MicrolabSTARMock\n\nhamilton = MicrolabSTARMock()\n# The same setup\u002Fbuild-deck\u002Fpipetting code that runs against real hardware.\n","python","",[763,790,791,822,829,845],{"__ignoreMap":788},[792,793,796,800,804,808,811,813,816,819],"span",{"class":794,"line":795},"line",1,[792,797,799],{"class":798},"s7zQu","from",[792,801,803],{"class":802},"sTEyZ"," unitelabs",[792,805,807],{"class":806},"sMK4o",".",[792,809,810],{"class":802},"liquid_handling",[792,812,807],{"class":806},[792,814,815],{"class":802},"testing ",[792,817,818],{"class":798},"import",[792,820,821],{"class":802}," MicrolabSTARMock\n",[792,823,825],{"class":794,"line":824},2,[792,826,828],{"emptyLinePlaceholder":827},true,"\n",[792,830,832,835,838,842],{"class":794,"line":831},3,[792,833,834],{"class":802},"hamilton ",[792,836,837],{"class":806},"=",[792,839,841],{"class":840},"s2Zo4"," MicrolabSTARMock",[792,843,844],{"class":806},"()\n",[792,846,848],{"class":794,"line":847},4,[792,849,851],{"class":850},"sHwdD","# The same setup\u002Fbuild-deck\u002Fpipetting code that runs against real hardware.\n",[853,854,856],"h2",{"id":855},"what-the-mock-validates","What the mock validates",[756,858,859],{},"The mock is a functional model of the device, not a full physics simulation. It is good at catching structural and state errors:",[861,862,863,871,877,883,889],"ul",{},[864,865,866,870],"li",{},[867,868,869],"strong",{},"Deck conflicts"," — placing two resources at the same position",[864,872,873,876],{},[867,874,875],{},"Volume errors"," — aspirating more than a well contains, overfilling a well",[864,878,879,882],{},[867,880,881],{},"Tip state errors"," — aspirating without tips, dropping tips that were never picked up",[864,884,885,888],{},[867,886,887],{},"Wrong resource types"," — placing a plate in a tip carrier slot",[864,890,891,894],{},[867,892,893],{},"Liquid tracking"," — every aspirate and dispense updates volumes, so you can assert the final state",[756,896,897],{},"This is enough to find off-by-one errors, wrong well indexing, mis-ordered pickups, and volume arithmetic mistakes before any liquid is touched.",[853,899,901],{"id":900},"what-the-mock-does-not-validate","What the mock does not validate",[756,903,904],{},"The mock deliberately stops short of simulating physics. It will not catch:",[861,906,907,913,919,925],{},[864,908,909,912],{},[867,910,911],{},"Physical reachability or collision detection"," — whether the arm can actually move to a position without hitting something",[864,914,915,918],{},[867,916,917],{},"Timing and speed parameters"," — flow rates, velocities, and dwell times do not produce physical effects",[864,920,921,924],{},[867,922,923],{},"Hardware-specific errors"," — pressure, clot detection, optical verifications",[864,926,927,930],{},[867,928,929],{},"Channel movement state"," — channel positions between commands are not tracked",[756,932,933],{},"Use real hardware for these.",[853,935,937],{"id":936},"why-this-boundary-matters","Why this boundary matters",[756,939,940],{},"The boundary is deliberate. A simulator that tries to model physics produces false confidence when the model is wrong and false alarms when the model is too conservative. A simulator that only models the state machine — what the SDK knows — is honest about what it covers.",[756,942,943],{},"Running protocols against the mock first catches the class of bugs that are cheapest to fix: arithmetic, indexing, sequencing. The bugs that remain are the ones that need hardware anyway.",[853,945,947],{"id":946},"switching-between-mock-and-real","Switching between mock and real",[756,949,950],{},"The two objects are interface-compatible. Most protocols gate the choice behind a flag:",[783,952,954],{"className":785,"code":953,"language":787,"meta":788,"style":788},"if mock_run:\n    hamilton = MicrolabSTARMock()\nelse:\n    hamilton = MicrolabSTAR(name=\"Microlab STAR\", client=client)\n",[763,955,956,967,978,985],{"__ignoreMap":788},[792,957,958,961,964],{"class":794,"line":795},[792,959,960],{"class":798},"if",[792,962,963],{"class":802}," mock_run",[792,965,966],{"class":806},":\n",[792,968,969,972,974,976],{"class":794,"line":824},[792,970,971],{"class":802},"    hamilton ",[792,973,837],{"class":806},[792,975,841],{"class":840},[792,977,844],{"class":806},[792,979,980,983],{"class":794,"line":831},[792,981,982],{"class":798},"else",[792,984,966],{"class":806},[792,986,987,989,991,994,997,1001,1003,1006,1010,1012,1015,1018,1020,1023],{"class":794,"line":847},[792,988,971],{"class":802},[792,990,837],{"class":806},[792,992,993],{"class":840}," MicrolabSTAR",[792,995,996],{"class":806},"(",[792,998,1000],{"class":999},"sHdIc","name",[792,1002,837],{"class":806},[792,1004,1005],{"class":806},"\"",[792,1007,1009],{"class":1008},"sfazB","Microlab STAR",[792,1011,1005],{"class":806},[792,1013,1014],{"class":806},",",[792,1016,1017],{"class":999}," client",[792,1019,837],{"class":806},[792,1021,1022],{"class":840},"client",[792,1024,1025],{"class":806},")\n",[756,1027,1028],{},"All downstream code — pipetting commands, movement, module activation — works identically against either.",[853,1030,1032],{"id":1031},"where-to-go-next","Where to go next",[861,1034,1035,1042],{},[864,1036,1037,1041],{},[1038,1039,179],"a",{"href":1040},"\u002Foperate\u002Fguides\u002Fsimulation\u002F"," — the procedural how-to, including mock configuration, module activation in simulation, and inspecting liquid state",[864,1043,1044,1047],{},[1038,1045,143],{"href":1046},"\u002Foperate\u002Fyour-first-protocol\u002F"," — a runnable mock-first 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